This page contains links to search tools for finding tracks displayed in the browser or downloadable files that are part of the ENCODE project. All tracks and files for ENCODE data are released as part of the ENCODE production phase (September 2007-present). For bulk download, retrieval by FTP is recommended along with rsync. Using rsync, for example "rsync -a -P rsync://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeDir/wgEncodeFile ./", has the advantage of starting up where it left off after a failure, when ran again. All ENCODE data are covered by the ENCODE data release policy.

Search for tracks visible in the Genome Browser - Human GRCh37/hg19 assembly.
Search for downloadable files of data aligned to the Human GRCh37/hg19 assembly.

Search for tracks visible in the Genome Browser - Human NCBI36/hg18 assembly.
Search for downloadable files of data aligned to the Human NCBI36/hg18 assembly.

Search for tracks visible in the Genome Browser - Mouse NCBI37/mm9 assembly.
Search for downloadable files of data aligned to the Mouse NCBI37/mm9 assembly.